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LNCD
Admin » Preprocess Functional (Hallquist pipeline)

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tools:preprocessfunctional [2023/11/02 14:28] – created willtools:preprocessfunctional [2026/03/25 15:57] (current) – [QC] will
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 |''m'' | motion: realign (6dof affine -- trans and rot) every timepoint to the mean so a voxel is in the same spot over time   | |''m'' | motion: realign (6dof affine -- trans and rot) every timepoint to the mean so a voxel is in the same spot over time   |
  
 +==== QC ====
 +
 +See ''qa_images/'' for func overlay on T1w ("mprage"). For full 3D/volumetric images, use ''qa_images/funct_to_struct.nii.gz'' with ''mprage.nii.gz'', likely with [[:tools:afni_gui]]'s overlay/underlay slider (push ''4'' or ''5'').
 +
 +Existing [[:tools:qc]] for [[:grants:7t]] in [[:grants:7t:mr:qc]]