Differences

This shows you the differences between two versions of the page.

Link to this comparison view

tools:fmri_preproc [2026/03/19 14:32] – created willtools:fmri_preproc [2026/03/19 14:36] (current) – will
Line 1: Line 1:
-====== fMRI Prerpocessing ======+====== fMRI Preprocessing ======
 This page is a generic overview. For specific software see This page is a generic overview. For specific software see
   * [[:tools:fmriprep]] + [[:tools:xcpd]] -- BIDS App standard functional MRI preprocessing   * [[:tools:fmriprep]] + [[:tools:xcpd]] -- BIDS App standard functional MRI preprocessing
-  * [[tools:preprocessfunctional]] -- in-house legacy pipeline with useful features+  * [[tools:preprocessfunctional]] -- in-house legacy pipeline from Hallquist. Has useful features and exists for older studies ([[:grants:cog]], [[:grants:pet]], [[grants:7t]]) 
 + 
 + 
 +Considerations: 
 +  * Warping/output space: across participants ''MNI''; per-session (''bold'' or ''anat'') 
 +  * scope of signal cleaning: minimal (fmriprep, ABCD), maximal (xcpd, hallquist)